Visualize and edit phylogenetic trees
Forester
Forester
https://sites.google.com/site/cmzmasek/home/software/archaeopteryx
Download forester
Download forester
wget http://www.phyloxml.org/download/forester/forester_1050.jar
Start forester
Start forester
requires Java version 8 or higher
# install "non-headless" Java 11 on Ubuntu
sudo apt-get update
sudo apt-get install openjdk-11-jre # (not "openjdk-11-jre-headless" )
java -version
openjdk version "11.0.4"
# run forester
java -cp /path/to/forester_1050.jar org.forester.archaeopteryx.Archaeopteryx
→ Java error: Assistive Technology not found
Open tree file
Open tree file
→ "File" → "Read tree from file..."
https://sites.google.com/site/cmzmasek/home/software/archaeopteryx