Error while running "multiple_join_paired_end.py"
multiple_join_paired_ends.py -i RawData -o JoinedReads
Cannot find fastq-join. Is it installed? Is it in your path?
Problem:
Linux package ea-utils is missing.
Solution:
sudo apt-get install ea-utils
https://github.com/ExpressionAnalysis/ea-utils/blob/wiki/Compiling.md
# download ea-utils from: https://expressionanalysis.github.io/ea-utils/
wget https://github.com/ExpressionAnalysis/ea-utils/zipball/master
unzip master
# install required libraries
sudo apt-get install libgsl0-dev
# compile
cd ExpressionAnalysis-ea-utils-*/clipper
make
# add path to your .bashrc file
export PATH=$PATH:/path/to/my/ea-utils/ExpressionAnalysis-ea-utils-bd148d4/clipper
see more: packages required by QIIME