Screening for presence of genes in short read samples
Screening for presence of genes in short read samples
full genome shotgun sequencing
screen for presence of MLST genes or self-defined reference gene sequences
screen for presence of MLST genes or self-defined reference gene sequences
screen for antibiotic resistance genes or MLST genes (local assembly based approach)
Screening for presence of genes in assembled contigs
Screening for presence of genes in assembled contigs
screening of contigs for antimicrobial resistance or virulence genes
Screening for bacterial strains in short read samples
Screening for bacterial strains in short read samples
full genome shotgun sequencing
screen for new strains of a species (E. coli) and identify the strain specific gene set