Sequence data

→ Public databases (genomes, genes & proteins)

    NCBI RefSeq GenBank, Uniprot protein sequences, antimicrobial resistance (AMR) genes, ...

→ NCBI SRA short-read sequence repository

    Download SRA files, converting SRA to FASTQ , ...

→ FASTA sequence file format

    Multi-FASTA format, ...

→ FASTQ sequence file format

    Illumina FASTQ, Phred quality scores, ...