How to install bowtie2 on Ubuntu/Linux?
How to install bowtie2 on Ubuntu/Linux?
download page
https://sourceforge.net/projects/bowtie-bio/files/bowtie2/
a) Install bowtie2 using conda
a) Install bowtie2 using conda
conda install -c bioconda bowtie2
https://anaconda.org/bioconda/bowtie2
b) Install bowtie2 using a package manager
b) Install bowtie2 using a package manager
# Ubuntu
sudo apt update
sudo apt install bowtie2
# CentOS
yum update
yum install bowtie2
https://centos.pkgs.org/7/epel-x86_64/bowtie2-2.4.1-1.el7.x86_64.rpm.html
c) Install bowtie2 manually on Ubuntu/Linux
c) Install bowtie2 manually on Ubuntu/Linux
# create and go to install directory
cd $HOME/tools/bowtie2/
# download Ubuntu/Linux version
wget https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.4.2/bowtie2-2.4.2-sra-linux-x86_64.zip/download
# decompress
unzip download
# add location to system PATH
export PATH=$HOME/tools/bowtie2/bowtie2-2.4.2-sra-linux-x86_64:$PATH
Check installation
Check installation
bowtie2 --help
Bowtie2 errors