- adapter removal and read quality trimming - internally based on Cutadapt and FastQC
FASTX-Toolkithttp://hannonlab.cshl.edu/fastx_toolkit/ Usearch http://www.drive5.com/usearch/manual/cmd_fastq_filter.html Trimmomatic http://www.usadellab.org/cms/?page=trimmomatic Sickle https://github.com/ucdavis-bioinformatics/sickle |
Tools > Shotgun sequencing >
Quality control
Subpages (1):
Trim Galore