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Tools‎ > ‎Shotgun sequencing‎ > ‎

Quality control

Quality control & raw data processing tools


FastqMcf (ea-utils)
https://github.com/ExpressionAnalysis/ea-utils/blob/wiki/FastqMcf.md

Trim Galore
- adapter removal and read quality trimming
- internally based on Cutadapt and FastQC
https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/

FastQC
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

FASTX-Toolkit
http://hannonlab.cshl.edu/fastx_toolkit/

Usearch
http://www.drive5.com/usearch/manual/cmd_fastq_filter.html

Trimmomatic
http://www.usadellab.org/cms/?page=trimmomatic

Sickle
https://github.com/ucdavis-bioinformatics/sickle


Subpages (1): Trim Galore
Author: Matthias Scholz
https://twitter.com/panphlan

https://twitter.com/panphlan


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