SPAdesshort reads assemblerhttp://bioinf.spbau.ru/spades MEGAHITfor assembling large and complex metagenomics datahttps://github.com/voutcn/megahit MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph SSPACEScaffolding pre-assembled contigs using SSPACESSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information. http://www.baseclear.com/bioinformatics-tools VelvetFast assembler for small genomeshttps://github.com/dzerbino/velvet SOAPdenovoDesigned for assembling large plant and animal genomeshttp://soap.genomics.org.cn/soapdenovo.html read more https://en.wikipedia.org/wiki/Sequence_assembly |
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MEGAHIT