# run otu picking with usearch61
pick_open_reference_otus.py -i $PWD/SEQ/seqs.fna -o $PWD/OTU/ -r $REFSEQS -s 0.1 -m usearch61 -p $PWD/otu_settings.txt Error running usearch61. Possible causes are unsupported version (current supported version is usearch v6.1.544) is installed or improperly formatted input file was provided # check log file cat OTU/step1_otus/abundance_sorted.log usearch_i86linux32 v6.1.544, 4.0Gb RAM (8.1Gb total), 4 cores °°° ---Fatal error--- Out of memory, mymalloc(34603016), curr 4.27e+09 bytes Work around: Run pick_open_reference_otus.py without option "pick_otus:enable_rev_strand_match True" to half the memory usage. Solution: upgrade to a 64 bit version of usearch61 (not free) read more |