Shotgun sequencing is a technology that breaks all microbial DNA into small pieces before sequencing. The short pieces of sequenced DNA are called → short reads.
Short read toolsAnalyzing short read samples from full genome shotgun sequencingShort sequence reads are analyzed by → read mapping (alignment to reference sequences) or assembling into longer → contigs.
SPAdes, MEGAHIT,...
screen for marker genes or strains in short-read samples
|
Tools >
