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PackagesNotFoundError

2019

Error while installing QIIME-1 in conda environment


conda create -n qiime1 python=2.7 qiime matplotlib=1.4.3 mock nose -c bioconda

PackagesNotFoundError: The following packages are not available from current channels:
  - qiime -> pynast==1.2.2 -> cogent[version='>=1.5.3'] -> mpi4py[version='>=1.0']
  - qiime -> xorg-libxau
  - qiime -> xorg-libxext
  - qiime -> xorg-libsm
  - qiime -> xorg-libxdmcp
  - qiime -> xorg-libxrender
  - qiime -> natsort[version='<4.0.0']
  - qiime -> libpng[version='>=1.2.50,<1.3.0a0']
  - matplotlib=1.4.3

Solution

# create manual a new conda environment "qiime1", install using pip

conda create -n qiime1 python=2.7  # create conda environment "qiime1"  

conda activate qiime1    # open "qiime1" environment
pip install numpy        # install numpy (python)
pip install qiime        # install qiime-1 (python)
pip install h5py         # install h5py (python) for reading .biom files
pip install matplotlib==1.4.3

print_qiime_config.py -t # test qiime-1 configuration

https://groups.google.com/forum/#!topic/qiime-forum/8NGPfPT6eAk