Ubuntu / Linux
http://sco.h-its.org/exelixis/web/software/raxml/hands_on.html
https://github.com/stamatak/standard-RAxML
# download
wget https://github.com/stamatak/standard-RAxML/archive/master.zip
unzip master.zip
# compile source code
cd standard-RAxML-master/
make -f Makefile.gcc # basic non-parallized version
make -f Makefile.SSE3.gcc # x86 processor optimized version
make -f Makefile.PTHREADS.gcc # parallelized version
make -f Makefile.SSE3.PTHREADS.gcc # parallelized and x86 processor optimized version
ls raxmlHPC*
raxmlHPC
raxmlHPC-PTHREADS
raxmlHPC-PTHREADS-SSE3
raxmlHPC-SSE3
# make RAxML files accessible
Option 1: move raxml files to bin/ folder (admin rights required)
sudo cp raxmlHPC* /usr/local/bin/
Option 2: alternatively, add your RAxML path to the .bashrc file
export PATH=$HOME/tools/RAxML/standard-RAxML-master:$PATH