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FastANI

Average Nucleotide Identity (ANI)

FastANI tool: to compare draft and reference genomes

Jain, C., Rodriguez-R, L.M., Phillippy, A.M. et al., Nature Communication (2018).


Install


Help

fastANI -h
-r <value>, --ref <value>
    reference genome (fasta/fastq)[.gz]
-q <value>, --query <value>
    query genome (fasta/fastq)[.gz]
°°°


Example


fastANI -q draft_genome.fasta -r reference_genome.fasta -o fastani.out

cat fastani.out
draft_genome.fasta   reference_genome.fasta   96.41  330  352

Mapping result
Nucleotide Identity (ANI) = 96.41
330 of total 352 sequence fragments were aligned as orthologous matches






Subpages (1): Install FastANI