Tools‎ > ‎Sequence data‎ > ‎

convert fastq to fasta

Seqtk tools


# Convert FASTQ to FASTA
seqtk seq -a IN.fastq > OUT.fasta

# Convert FASTQ to FASTA and set bases of quality lower than 20 to N
seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta


# Download Seqtk
https://github.com/lh3/seqtk





see also:
awk, sed, perl one-liners